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ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI

Oskar Maier*, Bjoern H. Menze, Janina von der Gablentz, Levin Häni, Mattias P. Heinrich, Matthias Liebrand, Stefan Winzeck, Abdul Basit, Paul Bentley, Liang Chen, Daan Christiaens, Francis Dutil, Karl Egger, Chaolu Feng, Ben Glocker, Michael Götz, Tom Haeck, Hanna Leena Halme, Mohammad Havaei, Khan M. IftekharuddinPierre Marc Jodoin, Konstantinos Kamnitsas, Elias Kellner, Antti Korvenoja, Hugo Larochelle, Christian Ledig, Jia Hong Lee, Frederik Maes, Qaiser Mahmood, Klaus H. Maier-Hein, Richard McKinley, John Muschelli, Chris Pal, Linmin Pei, Janaki Raman Rangarajan, Syed M.S. Reza, David Robben, Daniel Rueckert, Eero Salli, Paul Suetens, Ching Wei Wang, Matthias Wilms, Jan S. Kirschke, Ulrike M. Krämer, Thomas F. Münte, Peter Schramm, Roland Wiest, Heinz Handels, Mauricio Reyes

*Corresponding author for this work

Abstract

Ischemic stroke is the most common cerebrovascular disease, and its diagnosis, treatment, and study relies on non-invasive imaging. Algorithms for stroke lesion segmentation from magnetic resonance imaging (MRI) volumes are intensely researched, but the reported results are largely incomparable due to different datasets and evaluation schemes. We approached this urgent problem of comparability with the Ischemic Stroke Lesion Segmentation (ISLES) challenge organized in conjunction with the MICCAI 2015 conference. In this paper we propose a common evaluation framework, describe the publicly available datasets, and present the results of the two sub-challenges: Sub-Acute Stroke Lesion Segmentation (SISS) and Stroke Perfusion Estimation (SPES). A total of 16 research groups participated with a wide range of state-of-the-art automatic segmentation algorithms. A thorough analysis of the obtained data enables a critical evaluation of the current state-of-the-art, recommendations for further developments, and the identification of remaining challenges. The segmentation of acute perfusion lesions addressed in SPES was found to be feasible. However, algorithms applied to sub-acute lesion segmentation in SISS still lack accuracy. Overall, no algorithmic characteristic of any method was found to perform superior to the others. Instead, the characteristics of stroke lesion appearances, their evolution, and the observed challenges should be studied in detail. The annotated ISLES image datasets continue to be publicly available through an online evaluation system to serve as an ongoing benchmarking resource (www.isles-challenge.org).

Original languageEnglish
JournalMedical Image Analysis
Volume35
Pages (from-to)250-269
Number of pages20
ISSN1361-8415
DOIs
Publication statusPublished - 01.01.2017

Funding

Image 11 CN-Neu This work was supported by the Fundamental Research Funds for the Central Universities of China under grant N140403006 and the Postdoctoral Scientific Research Funds of Northeastern University under grant No. 20150310 . Image 7 US-Jhu This work was funded by the Epidemiology and Biostatistics training grant from the NIH (T32AG021334). Image 2 US-Imp1 This work was supported by NIHR Grant i4i: Decision-assist software for management of acute ischaemic stroke using brain-imaging machine-learning (Ref: II-LA-0814-20007). Image 9 US-Odu This work was partially supported through a grant from NCI/NIH (R15CA115464). Image 6 US-Imp2 This work was partially supported by the Imperial PhD Scholarship Programme and the Framework 7 program of the EU in the context of CENTER-TBI ( https://www.center-tbi.eu ). Image 15 BE-Kul2 This work was financially supported by the KU Leuven Concerted Research Action GOA/11/006. David Robben is supported by a Ph.D. fellowship of the Research Foundation - Flanders (FWO). Daan Christiaens is supported by Ph.D. grant SB 121013 of the Agency for Innovation by Science and Technology (IWT). Janaki Raman Rangarajan is supported by IWT SBO project MIRIAD (Molecular Imaging Research Initiative for Application in Drug Development, SBO-130065). Image 13 CA-USher This work was supported by NSERC Discovery Grant 371951. Image 10 NW-Ntust This work was supported by the Ministry of Science and Technology of Taiwan under the Grant (MOST104-2221-E-011-085). Appendix A

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being
  2. SDG 9 - Industry, Innovation, and Infrastructure
    SDG 9 Industry, Innovation, and Infrastructure
  3. SDG 10 - Reduced Inequalities
    SDG 10 Reduced Inequalities

Research Areas and Centers

  • Academic Focus: Center for Brain, Behavior and Metabolism (CBBM)

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