Improved base calling for the Illumina Genome Analyzer using machine learning strategies

Martin Kircher; Udo Stenzel; Janet Kelso

doi:10.1186/gb-2009-10-8-r83

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

Martin Kircher, Udo Stenzel, Janet Kelso^*

^*Corresponding author for this work

Institute of Human Genetics

Max Planck Institute for Evolutionary Anthropology (MPI-EVA)

201 Citations (Scopus)

Abstract

The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with respect to chemistry and technology than other publicly available packages. Ibis is freely available under the GPL from http://bioinf.eva.mpg.de/Ibis/.

Original language	English
Article number	R83
Journal	Genome Biology
Volume	10
Issue number	8
ISSN	1474-7596
DOIs	https://doi.org/10.1186/gb-2009-10-8-r83
Publication status	Published - 14.08.2009

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

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10.1186/gb-2009-10-8-r83

Cite this

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abstract = "The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with respect to chemistry and technology than other publicly available packages. Ibis is freely available under the GPL from http://bioinf.eva.mpg.de/Ibis/.",

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AB - The Illumina Genome Analyzer generates millions of short sequencing reads. We present Ibis (Improved base identification system), an accurate, fast and easy-to-use base caller that significantly reduces the error rate and increases the output of usable reads. Ibis is faster and more robust with respect to chemistry and technology than other publicly available packages. Ibis is freely available under the GPL from http://bioinf.eva.mpg.de/Ibis/.

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Improved base calling for the Illumina Genome Analyzer using machine learning strategies

Abstract

UN SDGs

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