MBECS: Microbiome Batch Effects Correction Suite

Michael Olbrich; Axel Künstner; Hauke Busch

doi:10.1186/s12859-023-05252-w

MBECS: Microbiome Batch Effects Correction Suite

Michael Olbrich^*, Axel Künstner, Hauke Busch^*

^*Korrespondierende/r Autor/-in für diese Arbeit

Lübecker Institut für Experimentelle Dermatologie (LIED)

Abstract

Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and evaluation metrics into a software package for the statistical computation framework R.

Originalsprache	Englisch
Aufsatznummer	1
Zeitschrift	BMC Bioinformatics
Jahrgang	24
Ausgabenummer	1
Seiten (von - bis)	182
Seitenumfang	1
ISSN	1367-4803
DOIs	https://doi.org/10.1186/s12859-023-05252-w
Publikationsstatus	Veröffentlicht - 2023

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Dieser Output leistet einen Beitrag zu folgendem(n) Ziel(en) für nachhaltige Entwicklung

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10.1186/s12859-023-05252-w

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abstract = "Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and evaluation metrics into a software package for the statistical computation framework R.",

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AU - Künstner, Axel

AU - Busch, Hauke

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AB - Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and evaluation metrics into a software package for the statistical computation framework R.

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U2 - 10.1186/s12859-023-05252-w

DO - 10.1186/s12859-023-05252-w

M3 - Journal articles

C2 - 37138207

AN - SCOPUS:85158042636

SN - 1367-4803

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JO - BMC Bioinformatics

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IS - 1

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MBECS: Microbiome Batch Effects Correction Suite

Abstract

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